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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1291715_1291886_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1291715 - 1291886
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
CTTTTTTTCACA
Flanking Amino Acid:
SGEFQSSTESSSDPVLQVRQ
Intron Amino Acid Position:
1084

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
90.7
0.91
0.6
86.9
23.9
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
62.6
0.39
1.7
73.92
38.7

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023056
1275841 - 1311261
35421
ENSAPLT00000020598
1275841 - 1311261
35421
ENSAPLT00000029382
1273205 - 1311261
38057
ENSAPLT00000007609
1275841 - 1311261
35421
ENSAPLT00000026815
1287238 - 1311261
24024
ENSAPLT00000023658
1275841 - 1314143
38303