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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12937140_12943590_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12937140 - 12943590
Intron Length:
6451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTTCTCAATG
Flanking Amino Acid:
QQKGITVKQKRQNVHLAVHA
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
75.5
34.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
82.1
0.72
0.9
80.5
37
Minor 5ss
32.4
-2
3.9
48.7
47.8
Minor BPS
63.9
0.3
1.6
68.05
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005732
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005926
12931909 - 12950184
18276