About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12943750_12947951_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12943750 - 12947951
Intron Length:
4202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
CAACTGACTGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
TACCTGTCAACT
Flanking Amino Acid:
TTLEHGCSLSSERRRGGNKL
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
46.6
-0.1
1.7
47.5
39.8
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
46.7
-0.1
2.2
66.43
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005732
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005926
12931909 - 12950184
18276