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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12948016_12948444_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12948016 - 12948444
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCACCTAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCACCTAAACA
Flanking Amino Acid:
FGTGECFVFRLQPEVERYEW
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
67
0.38
1
62.5
37.5
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
66.5
0.51
1.7
75.92
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005732
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005926
12931909 - 12950184
18276