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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12948680_12950029_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12948680 - 12950029
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ACAGCTTTAAAT
Flanking Amino Acid:
MAGSSECIIIGGGDGQALYL
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.1
0.81
0.8
80.7
31.3
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
58.2
0.33
1.5
68.14
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005732
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005926
12931909 - 12950184
18276