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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12955278_12977783_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12955278 - 12977783
Intron Length:
22506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
TTTTACCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTACCT
Flanking Amino Acid:
RLIGRAGGYQALGAAYGTAK
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.6
0.82
0.8
78
36.1
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
67.9
0.64
1.6
82.56
39.6

Associated Gene:

Gene:
ATP6V0C
Ensembl Gene ID:
ENSAPLG00000023935
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036252
12955196 - 12979028
23833