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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1297386_1297605_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1297386 - 1297605
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGAT
5'SS Class:
major
3'SS Sequence:
TCTCAATTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTTGTCTCAATT
Flanking Amino Acid:
RKDFVPYITKGLRSNVLLSF
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
73
38.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
70
0.45
1
65.6
39.7
Minor 5ss
36.4
-1.5
3.7
55
49.2
Minor BPS
66.1
0.58
1.6
83.48
38.1

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023056
1275841 - 1311261
35421
ENSAPLT00000020598
1275841 - 1311261
35421
ENSAPLT00000029382
1273205 - 1311261
38057
ENSAPLT00000007609
1275841 - 1311261
35421
ENSAPLT00000026815
1287238 - 1311261
24024
ENSAPLT00000023658
1275841 - 1314143
38303