About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12977968_12978823_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12977968 - 12978823
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TGCCACTGAATC
Flanking Amino Acid:
NALSPSITLFKSFLQLGAGL
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
62
0.3
1
53
34.1
Major PPT
79.1
0.65
0.8
72.2
32.6
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
49.5
-0
1.6
58.85
39.7

Associated Gene:

Gene:
ATP6V0C
Ensembl Gene ID:
ENSAPLG00000023935
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036252
12955196 - 12979028
23833