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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12986118_12986248_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12986118 - 12986248
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
AGGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGTGAG
U12 Branch Point Sequence:
CCAGCGTGAGGC
Flanking Amino Acid:
CRILRDRRLQREDLWVREGK
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
40.9
-0.5
1.7
30.7
44
Major PPT
62.9
0.29
0.9
55.1
35.8
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
33
-1.3
2.2
35.12
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021841
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018359
12986035 - 12987496
1462