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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12986386_12987149_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12986386 - 12987149
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCGA
5'SS Class:
major
3'SS Sequence:
GTTCATGGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTGTTCATG
Flanking Amino Acid:
APGFIDVQINGGFGVDFSLA
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
60.9
45.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
67.7
0.4
1.1
60.7
44.5
Minor 5ss
30.6
-2.2
3.3
39.3
46
Minor BPS
48.5
-0.2
2.4
66.07
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021841
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018359
12986035 - 12987496
1462