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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1298743_1299260_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1298743 - 1299260
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTC
Flanking Amino Acid:
YHNYLDKAKQREIVYCLEHG
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.3
37.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.79
0.7
78
36.4
Minor 5ss
27.1
-2.6
3.7
36.6
47.9
Minor BPS
61.4
0.34
1.5
70.06
35.9

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020598
1275841 - 1311261
35421
ENSAPLT00000029382
1273205 - 1311261
38057
ENSAPLT00000007609
1275841 - 1311261
35421
ENSAPLT00000026815
1287238 - 1311261
24024
ENSAPLT00000023658
1275841 - 1314143
38303
ENSAPLT00000023056
1275841 - 1311261
35421