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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1299396_1299725_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1299396 - 1299725
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
TGTGCTATATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTAACTTAACG
Flanking Amino Acid:
DLLASALSYMLTDKKTTDRL
Intron Amino Acid Position:
730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
58.9
45.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
69.8
0.45
1
67.7
42.3
Minor 5ss
34.6
-1.8
3.4
44.5
44.4
Minor BPS
66.2
0.37
1.7
69.32
43.6

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020598
1275841 - 1311261
35421
ENSAPLT00000029382
1273205 - 1311261
38057
ENSAPLT00000007609
1275841 - 1311261
35421
ENSAPLT00000026815
1287238 - 1311261
24024
ENSAPLT00000023658
1275841 - 1314143
38303
ENSAPLT00000023056
1275841 - 1311261
35421