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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12998678_12999007_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12998678 - 12999007
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
GATTTGATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGTCACCTGACA
Flanking Amino Acid:
IQGLEEHGESRLPEADPEAT
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
70.9
0.47
1
67.3
43.4
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
49.8
-0
1.9
67.33
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017564
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038637
12997628 - 13003015
5388