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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12999600_13001082_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12999600 - 13001082
Intron Length:
1483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
CCGTGTTGTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTTTCCTCATGC
Flanking Amino Acid:
DASHQDETLQQSDNQLWKEV
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
77.8
31.4
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
65.7
0.35
1
60.2
40.5
Minor 5ss
41.2
-1
2.5
51
45.5
Minor BPS
49.9
-0
2.1
67.5
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017564
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038637
12997628 - 13003015
5388