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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13001174_13001297_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13001174 - 13001297
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCATT
5'SS Class:
major
3'SS Sequence:
TGCACTGCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CTGCTTTGCACT
Flanking Amino Acid:
LKTQKSTPKQAEEALRAIKT
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
77.8
38.7
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
69.8
0.45
1
65.5
40.9
Minor 5ss
39.4
-1.2
3.1
49.4
46.6
Minor BPS
45.1
-0.3
1.9
61.09
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017564
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038637
12997628 - 13003015
5388