Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13001445_13001580_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13001445 - 13001580

Intron Length:

136

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAACA

5'SS Class:

strong_major

3'SS Sequence:

TCCCCTCTTTAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAACAT

U12 Branch Point Sequence:

CTAAACATAACT

Flanking Amino Acid:

RCKQLKLMQAAAKSARIMEV

Intron Amino Acid Position:

310

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

74.4

Major BPS

63.2

0.33

1.1

69.6

35.7

Major PPT

71.1

0.48

74.7

27.8

Minor 5ss

32.4

-2

3.1

40.9

45.1

Minor BPS

51.8

0.13

1.9

72.1

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017564

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038637

12997628 - 13003015

5388