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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1300723_1301324_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1300723 - 1301324
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGTAGGTT
5'SS Class:
weak_major
3'SS Sequence:
AGAAGCAGAGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTTTCTGCATT
Flanking Amino Acid:
RFSPYCLCDFRASEKKPTGT
Intron Amino Acid Position:
642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.5
0.01
1
53.7
36.9
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
42.4
-0.4
1.1
28.7
35
Minor 5ss
37.7
-1.4
3.9
59.6
46.7
Minor BPS
60.4
0.41
1.9
84.15
37

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023056
1275841 - 1311261
35421
ENSAPLT00000020598
1275841 - 1311261
35421
ENSAPLT00000029382
1273205 - 1311261
38057
ENSAPLT00000007609
1275841 - 1311261
35421
ENSAPLT00000026815
1287238 - 1311261
24024
ENSAPLT00000023658
1275841 - 1314143
38303