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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1301804_1302356_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1301804 - 1302356
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGTG
5'SS Class:
major
3'SS Sequence:
TGTTCCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTTGCCTTTAGA
Flanking Amino Acid:
AVLGLLIILQTKLYSLPSSH
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.5
41.5
Major BPS
79.2
0.72
1
75
40
Major PPT
82.3
0.73
0.8
77.5
31.2
Minor 5ss
39.3
-1.2
3.5
55
49.2
Minor BPS
58.8
0.27
2.1
75.18
42.3

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007609
1275841 - 1311261
35421
ENSAPLT00000026815
1287238 - 1311261
24024
ENSAPLT00000023658
1275841 - 1314143
38303
ENSAPLT00000023056
1275841 - 1311261
35421
ENSAPLT00000020598
1275841 - 1311261
35421
ENSAPLT00000029382
1273205 - 1311261
38057