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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1302974_1303835_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1302974 - 1303835
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTATTAAAGT
Flanking Amino Acid:
VLSINRQFYEEELINLVVIS
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
80.1
0.68
0.9
73.4
37
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
49.8
0.07
2.1
74.83
42.2

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023056
1275841 - 1311261
35421
ENSAPLT00000020598
1275841 - 1311261
35421
ENSAPLT00000029382
1273205 - 1311261
38057
ENSAPLT00000007609
1275841 - 1311261
35421
ENSAPLT00000026815
1287238 - 1311261
24024
ENSAPLT00000023658
1275841 - 1314143
38303