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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13032216_13034702_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13032216 - 13034702
Intron Length:
2487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CCTCGGTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TGTTCCTTTCCT
Flanking Amino Acid:
LLGPAQSKAPVDLPFPENST
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
67.1
0.38
1
60.2
40.4
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
48.1
-0
3.6
85.16
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006042
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006259
13031345 - 13045582
14238