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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13036292_13036644_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13036292 - 13036644
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTAAC
U12 Branch Point Sequence:
GGCTAGGTAACA
Flanking Amino Acid:
QTVSFCLLVADCQEWLSKSE
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.3
32.8
Major BPS
50.5
0.01
1.3
53.1
40.5
Major PPT
83.2
0.75
0.8
77.1
37.1
Minor 5ss
33.5
-1.9
3.1
44.4
43.7
Minor BPS
40.8
-0.7
2.6
53.6
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006042
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006259
13031345 - 13045582
14238