About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13039881_13040481_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13039881 - 13040481
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTGG
5'SS Class:
major
3'SS Sequence:
TGTCTCCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGGGAT
U12 Branch Point Sequence:
TGTCTCCCCATA
Flanking Amino Acid:
LSARLQSSFQVTAMTPLGEN
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.8
42.7
Major BPS
45.5
-0.2
1.6
42.8
49.4
Major PPT
71.6
0.49
0.8
65.9
30.3
Minor 5ss
32.8
-2
3.1
40.1
46
Minor BPS
40.8
-0.7
2.1
54.27
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006042
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006259
13031345 - 13045582
14238