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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13041484_13042368_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13041484 - 13042368
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGGGGGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
CTCACATTACTC
Flanking Amino Acid:
PLYTVPCKDDRPVSLSRCPS
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
57.3
0.16
1.2
52.4
46
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
46.7
-0.2
1.9
55.66
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006042
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006259
13031345 - 13045582
14238