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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13042512_13042751_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13042512 - 13042751
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGCAGG
5'SS Class:
major
3'SS Sequence:
CCTCGTCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
TGCTTCTCCACT
Flanking Amino Acid:
VALDLCFLTPNCSAWTMHHR
Intron Amino Acid Position:
906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
57.7
47
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
68.3
0.41
0.8
65.5
30.5
Minor 5ss
41
-1
2.9
54.4
43.6
Minor BPS
51.2
0.12
2
72.31
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006042
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006259
13031345 - 13045582
14238