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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13043723_13044518_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13043723 - 13044518
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTGCCTTTTACT
Flanking Amino Acid:
LVGLALHFIKRHPQNYTNIE
Intron Amino Acid Position:
1043

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
84.5
0.78
0.8
81.3
36
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
65.7
0.58
1.6
81.46
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006042
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006259
13031345 - 13045582
14238