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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13056172_13056812_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13056172 - 13056812
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
TCTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TGGTCCTGAAGT
Flanking Amino Acid:
VGRLTRNVTKDHIMEIFSTY
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
69.6
0.49
1
59.5
39
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
62.2
0.46
1.8
77.77
44.2

Associated Gene:

Gene:
RNPS1
Ensembl Gene ID:
ENSAPLG00000006231
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006452
13052615 - 13058882
6268
ENSAPLT00000018132
13054110 - 13059805
5696