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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13056967_13057433_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13056967 - 13057433
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATGCACA
Flanking Amino Acid:
AEKALKHMDGGQIDGQEITA
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
32.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.4
0.48
1
65.6
39.5
Minor 5ss
35.9
-1.6
3.5
51.5
45.7
Minor BPS
50.2
-0
2.2
72.28
39.2

Associated Gene:

Gene:
RNPS1
Ensembl Gene ID:
ENSAPLG00000006231
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018132
13054110 - 13059805
5696
ENSAPLT00000006452
13052615 - 13058882
6268