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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13060259_13060340_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13060259 - 13060340
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTCAGTGCG
5'SS Class:
major
3'SS Sequence:
TTTCTCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCGTTAC
U12 Branch Point Sequence:
TGTCCCGTTACC
Flanking Amino Acid:
ALSEPRGAAPRAGAGLRALL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
61
44
Major BPS
48.6
-0
1.2
40.7
39.7
Major PPT
83.5
0.75
0.7
81.7
23.3
Minor 5ss
28.9
-2.4
2.9
34.4
41
Minor BPS
49.7
-0
2.3
69.39
41.7

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121