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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13060610_13061182_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13060610 - 13061182
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGCG
5'SS Class:
major
3'SS Sequence:
TGTTTTATCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTGTTTTATCC
Flanking Amino Acid:
ALHEVAAALRGGSDCSISAL
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
58
38.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.4
0.71
0.9
74
40.4
Minor 5ss
22.7
-3.1
3.4
28.9
43.8
Minor BPS
54.5
0.12
1.7
64.74
41.8

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121