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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13061252_13061908_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13061252 - 13061908
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
GTGTATTTACCT
Flanking Amino Acid:
LGKVCIRGRQKEILSVLVPR
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
84.3
0.77
0.7
82
28.3
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
55.4
0.25
1.8
73.35
43.6

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121