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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13062512_13062818_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13062512 - 13062818
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCT
5'SS Class:
major
3'SS Sequence:
TCTTGCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TCTTGCTTTACA
Flanking Amino Acid:
KFLLLQYGYTTAVLQNLLGY
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
66.9
38.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.9
0.81
0.8
79.7
32.4
Minor 5ss
26.9
-2.7
3.5
39.6
45.9
Minor BPS
60.9
0.34
2.1
75.18
42.3

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121