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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13062888_13063850_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13062888 - 13063850
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTGATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATCCTCTGATT
Flanking Amino Acid:
DSLRRALLIKVLQELLETWS
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
78.5
31.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.8
0.56
0.9
72.8
36.5
Minor 5ss
42
-0.9
3.3
55.6
43.2
Minor BPS
54.9
0.24
1.6
74.18
36.5

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121