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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13063993_13064896_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13063993 - 13064896
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTTCTGACTT
Flanking Amino Acid:
KDSEIESCRQELLTSMMEGV
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
93.5
0.98
0.7
92.4
26.2
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
63.6
0.51
1.7
84.15
37

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121