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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13065034_13065775_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13065034 - 13065775
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGAATGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTCTTCTGAATG
Flanking Amino Acid:
NTDGPVLKFQYEEDDESREL
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
63.8
0.31
1
54.9
44.6
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
64.6
0.32
1.5
67.49
40.7

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121