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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13065862_13066454_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13065862 - 13066454
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTAATCTTACTG
Flanking Amino Acid:
SFCVPSVPDDSRKEKADAAL
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.3
0.64
0.9
72.5
37.8
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
54
-0
1.7
60.3
41.9

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121