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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13067277_13067594_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13067277 - 13067594
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTCTATTAATA
Flanking Amino Acid:
APVYIRDCIEVLTGSEDVDK
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88
0.85
0.7
85.6
29.1
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
62.2
0.38
1.5
72.26
33

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121