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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13069538_13070112_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13069538 - 13070112
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTAACAGAACA
Flanking Amino Acid:
SLRQRMDILDVLVLAARELS
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.9
31.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.6
0.8
0.6
78.7
30.2
Minor 5ss
37.8
-1.4
3.3
55.2
42.1
Minor BPS
50.2
0
2
71.87
39.1

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121