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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13070278_13070939_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13070278 - 13070939
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTCTCTTGGACA
Flanking Amino Acid:
IKSKTRRFAKGPSQVQVASG
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
70.4
35.4
Major BPS
73.9
0.59
1
81
30.2
Major PPT
73.6
0.53
1
71.7
38.2
Minor 5ss
26.8
-2.7
2.8
31.2
42.4
Minor BPS
65.8
0.49
1.5
74.83
36.8

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121