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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13072095_13072738_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13072095 - 13072738
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTGAGTTGT
5'SS Class:
major
3'SS Sequence:
CTTTCTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTTCTCCAACA
Flanking Amino Acid:
FVWALRFHTDSYVRQGLLSC
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.3
67.5
40.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.2
0.63
0.8
74
29.7
Minor 5ss
38
-1.4
3
49.8
41.2
Minor BPS
56
0.19
1.9
72.2
40

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121