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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13072855_13075973_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13072855 - 13075973
Intron Length:
3119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TATTCTTTTACA
Flanking Amino Acid:
ELLETQSWLGDVVEKDPDGD
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
89.3
0.88
0.7
84
30.6
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
72.3
0.7
1.5
80.29
35.7

Associated Gene:

Gene:
TELO2
Ensembl Gene ID:
ENSAPLG00000006268
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006538
13059960 - 13076080
16121