Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13079839_13080417_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13079839 - 13080417

Intron Length:

579

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTCC

5'SS Class:

strong_major

3'SS Sequence:

TTACTTCCTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

GCTTTCTTACTT

Flanking Amino Acid:

AMELLLTAKKYQEALQLCLK

Intron Amino Acid Position:

1155

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.9

75.8

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

79.7

0.67

0.8

78.4

30.2

Minor 5ss

45.1

-0.5

2.8

44.7

Minor BPS

63.3

0.49

1.6

75.64

41.8

Associated Gene:

Gene:

IFT140

Ensembl Gene ID:

ENSAPLG00000011283

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011743

13077272 - 13150303

73032

ENSAPLT00000006780

13077272 - 13150303

73032