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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13086334_13122009_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13086334 - 13122009
Intron Length:
35676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGTAT
5'SS Class:
major
3'SS Sequence:
TGCTTTATCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TCTGCTTTATCA
Flanking Amino Acid:
EAFKSIKLIKSEAIWENMAR
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
66.7
41.3
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
78
0.63
0.9
72.6
36.4
Minor 5ss
42.9
-0.8
3.5
64.2
47.3
Minor BPS
60.8
0.34
1.7
70.42
42.6

Associated Gene:

Gene:
IFT140
Ensembl Gene ID:
ENSAPLG00000011283
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011743
13077272 - 13150303
73032
ENSAPLT00000006780
13077272 - 13150303
73032