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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13096701_13108082_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13096701 - 13108082
Intron Length:
11382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TATGTTTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATCATTTTAACT
Flanking Amino Acid:
GFQESRSTVKLQFDMMRACN
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.7
33.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.7
0.53
0.9
66.4
40.4
Minor 5ss
41.9
-0.9
2.7
49.9
39.7
Minor BPS
68.9
0.67
1.2
78.29
38.3

Associated Gene:

Gene:
TMEM204
Ensembl Gene ID:
ENSAPLG00000011280
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011731
13096427 - 13119740
23314