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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1310250_1311123_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1310250 - 1311123
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAGAG
5'SS Class:
major
3'SS Sequence:
CATCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAGAT
U12 Branch Point Sequence:
TTTAGCTTATTT
Flanking Amino Acid:
EFIITAEILKELSIECGLSN
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
62.1
38.7
Major BPS
58.6
0.22
1.1
55.1
40.4
Major PPT
81.8
0.71
0.8
72.9
37
Minor 5ss
22.9
-3.1
3.3
27.9
44.1
Minor BPS
57
0.3
2.1
80.47
41.8

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023658
1275841 - 1314143
38303
ENSAPLT00000023056
1275841 - 1311261
35421
ENSAPLT00000020598
1275841 - 1311261
35421
ENSAPLT00000029382
1273205 - 1311261
38057
ENSAPLT00000007609
1275841 - 1311261
35421
ENSAPLT00000026815
1287238 - 1311261
24024