About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13108239_13119495_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13108239 - 13119495
Intron Length:
11257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
ACACTTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AACTCATTAAAA
Flanking Amino Acid:
EAIAAVFQLASFVLVIGLVT
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
78.7
0.65
0.9
72.9
36.5
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
58.3
0.26
1.7
65.95
39.6

Associated Gene:

Gene:
TMEM204
Ensembl Gene ID:
ENSAPLG00000011280
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011731
13096427 - 13119740
23314