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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13122204_13124464_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13122204 - 13124464
Intron Length:
2261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCATACTTGATA
Flanking Amino Acid:
EVPHYYFAKKPGETEKGQES
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
71.9
0.49
1
69.4
41.7
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
62
0.37
1.5
67.85
38.6

Associated Gene:

Gene:
IFT140
Ensembl Gene ID:
ENSAPLG00000011283
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011743
13077272 - 13150303
73032