About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1312326_1313861_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1312326 - 1313861
Intron Length:
1536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCG
5'SS Class:
major
3'SS Sequence:
TTCCTTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAG
U12 Branch Point Sequence:
TGTTCCTTCCCG
Flanking Amino Acid:
KCYDSSAPPQVMRYQVLLSL
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.2
61.4
42.5
Major BPS
48
-0.1
1.6
46.5
47
Major PPT
81.2
0.7
0.7
76.8
25.2
Minor 5ss
35.1
-1.7
3.5
47.6
48
Minor BPS
44.7
-0.5
3.6
67.9
45.5

Associated Gene:

Gene:
NTHL1
Ensembl Gene ID:
ENSAPLG00000008412
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008743
1311740 - 1317241
5502