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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13127982_13128428_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13127982 - 13128428
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCATTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CCTTCAGCAACT
Flanking Amino Acid:
GNKVSILVSKANGSIDSKIC
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79
0.65
0.8
76.8
30.6
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
45.9
-0.2
2.4
69.07
47.4

Associated Gene:

Gene:
IFT140
Ensembl Gene ID:
ENSAPLG00000011283
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006780
13077272 - 13150303
73032
ENSAPLT00000011743
13077272 - 13150303
73032