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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13130109_13130937_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13130109 - 13130937
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
ATGTACAAACCT
Flanking Amino Acid:
PYRVQVRTWQGTVKQLLVFS
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
69.8
0.49
1
61
37.5
Major PPT
85.2
0.79
0.7
83.7
24.4
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
42.5
-0.4
2.2
64.15
45.8

Associated Gene:

Gene:
IFT140
Ensembl Gene ID:
ENSAPLG00000011283
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011743
13077272 - 13150303
73032
ENSAPLT00000006780
13077272 - 13150303
73032