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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13136825_13138566_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13136825 - 13138566
Intron Length:
1742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGATCCTACATT
Flanking Amino Acid:
PEGEAEELMKVKLSGKIAHS
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.1
0.81
0.9
79.9
37.7
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
51.9
0.14
2.1
73.32
43.8

Associated Gene:

Gene:
IFT140
Ensembl Gene ID:
ENSAPLG00000011283
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006780
13077272 - 13150303
73032
ENSAPLT00000011743
13077272 - 13150303
73032